Package: batchtools 0.9.17
batchtools: Tools for Computation on Batch Systems
As a successor of the packages 'BatchJobs' and 'BatchExperiments', this package provides a parallel implementation of the Map function for high performance computing systems managed by schedulers 'IBM Spectrum LSF' (<https://www.ibm.com/products/hpc-workload-management>), 'OpenLava' (<https://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid Engine' (<https://www.univa.com/>), 'Slurm' (<https://slurm.schedmd.com/>), 'TORQUE/PBS' (<https://adaptivecomputing.com/cherry-services/torque-resource-manager/>), or 'Docker Swarm' (<https://docs.docker.com/engine/swarm/>). A multicore and socket mode allow the parallelization on a local machines, and multiple machines can be hooked up via SSH to create a makeshift cluster. Moreover, the package provides an abstraction mechanism to define large-scale computer experiments in a well-organized and reproducible way.
Authors:
batchtools_0.9.17.tar.gz
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batchtools.pdf |batchtools.html✨
batchtools/json (API)
NEWS
# Install 'batchtools' in R: |
install.packages('batchtools', repos = c('https://mllg.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mllg/batchtools/issues
batchexperimentsbatchjobsdocker-swarmhigh-performance-computinghpchpc-clusterslsfopenlavaparallel-computingreproducibilitysgeslurmtorque
Last updated 2 years agofrom:1196047ed5. Checks:OK: 2 NOTE: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 07 2024 |
R-4.5-win-x86_64 | NOTE | Nov 07 2024 |
R-4.5-linux-x86_64 | NOTE | Nov 07 2024 |
R-4.4-win-x86_64 | NOTE | Nov 07 2024 |
R-4.4-mac-x86_64 | NOTE | Nov 07 2024 |
R-4.4-mac-aarch64 | NOTE | Nov 07 2024 |
R-4.3-win-x86_64 | OK | Nov 07 2024 |
R-4.3-mac-x86_64 | NOTE | Nov 07 2024 |
R-4.3-mac-aarch64 | NOTE | Nov 07 2024 |
Exports:addAlgorithmaddExperimentsaddJobTagsaddProblemajoinassertRegistrybatchExportbatchMapbatchMapResultsbatchReducebinpackbtlapplybtmapplycfBrewTemplatecfHandleUnknownSubmitErrorcfKillJobcfReadBrewTemplatechunkclearRegistrydoJobCollectionestimateRuntimesexecJobfindConfFilefindDonefindErrorsfindExperimentsfindExpiredfindJobsfindNotDonefindNotStartedfindNotSubmittedfindOnSystemfindQueuedfindRunningfindStartedfindSubmittedfindTaggedfindTemplateFileflattengetDefaultRegistrygetErrorMessagesgetJobNamesgetJobParsgetJobResourcesgetJobStatusgetJobTablegetJobTagsgetLoggetStatusgetUsedJobTagsgrepLogsijoinkillJobsljoinloadRegistryloadResultlptmakeClusterFunctionsmakeClusterFunctionsDockermakeClusterFunctionsInteractivemakeClusterFunctionsLSFmakeClusterFunctionsMulticoremakeClusterFunctionsOpenLavamakeClusterFunctionsSGEmakeClusterFunctionsSlurmmakeClusterFunctionsSocketmakeClusterFunctionsSSHmakeClusterFunctionsTORQUEmakeExperimentRegistrymakeJobmakeJobCollectionmakeRegistrymakeSubmitJobResultojoinreduceResultsreduceResultsDataTablereduceResultsListremoveAlgorithmsremoveExperimentsremoveJobTagsremoveProblemsremoveRegistryresetJobsrjoinrunHookrunOSCommandsaveRegistrysetDefaultRegistrysetJobNamesshowLogsjoinsubmitJobssummarizeExperimentssweepRegistrysyncRegistrytestJobujoinunwrapwaitForJobsWorker
Dependencies:backportsbase64urlbrewcheckmateclicrayondata.tabledigestfsgluehmslifecyclepkgconfigprettyunitsprogressR6rappdirsrlangstringivctrswithr