Package: batchtools 0.9.17

batchtools: Tools for Computation on Batch Systems

As a successor of the packages 'BatchJobs' and 'BatchExperiments', this package provides a parallel implementation of the Map function for high performance computing systems managed by schedulers 'IBM Spectrum LSF' (<https://www.ibm.com/products/hpc-workload-management>), 'OpenLava' (<https://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid Engine' (<https://www.univa.com/>), 'Slurm' (<https://slurm.schedmd.com/>), 'TORQUE/PBS' (<https://adaptivecomputing.com/cherry-services/torque-resource-manager/>), or 'Docker Swarm' (<https://docs.docker.com/engine/swarm/>). A multicore and socket mode allow the parallelization on a local machines, and multiple machines can be hooked up via SSH to create a makeshift cluster. Moreover, the package provides an abstraction mechanism to define large-scale computer experiments in a well-organized and reproducible way.

Authors:Michel Lang [cre, aut], Bernd Bischl [aut], Dirk Surmann [ctb]

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NEWS

Peer review:

Bug tracker:https://github.com/mllg/batchtools/issues

On CRAN:

batchexperimentsbatchjobsdocker-swarmhigh-performance-computinghpchpc-clusterslsfopenlavaparallel-computingreproducibilitysgeslurmtorque

100 exports 171 stars 5.63 score 21 dependencies 12 dependents 3 mentions 686 scripts 2.0k downloads

Last updated 1 years agofrom:1196047ed5. Checks:OK: 2 NOTE: 7. Indexed: yes.

Exports:addAlgorithmaddExperimentsaddJobTagsaddProblemajoinassertRegistrybatchExportbatchMapbatchMapResultsbatchReducebinpackbtlapplybtmapplycfBrewTemplatecfHandleUnknownSubmitErrorcfKillJobcfReadBrewTemplatechunkclearRegistrydoJobCollectionestimateRuntimesexecJobfindConfFilefindDonefindErrorsfindExperimentsfindExpiredfindJobsfindNotDonefindNotStartedfindNotSubmittedfindOnSystemfindQueuedfindRunningfindStartedfindSubmittedfindTaggedfindTemplateFileflattengetDefaultRegistrygetErrorMessagesgetJobNamesgetJobParsgetJobResourcesgetJobStatusgetJobTablegetJobTagsgetLoggetStatusgetUsedJobTagsgrepLogsijoinkillJobsljoinloadRegistryloadResultlptmakeClusterFunctionsmakeClusterFunctionsDockermakeClusterFunctionsInteractivemakeClusterFunctionsLSFmakeClusterFunctionsMulticoremakeClusterFunctionsOpenLavamakeClusterFunctionsSGEmakeClusterFunctionsSlurmmakeClusterFunctionsSocketmakeClusterFunctionsSSHmakeClusterFunctionsTORQUEmakeExperimentRegistrymakeJobmakeJobCollectionmakeRegistrymakeSubmitJobResultojoinreduceResultsreduceResultsDataTablereduceResultsListremoveAlgorithmsremoveExperimentsremoveJobTagsremoveProblemsremoveRegistryresetJobsrjoinrunHookrunOSCommandsaveRegistrysetDefaultRegistrysetJobNamesshowLogsjoinsubmitJobssummarizeExperimentssweepRegistrysyncRegistrytestJobujoinunwrapwaitForJobsWorker

Dependencies:backportsbase64urlbrewcheckmateclicrayondata.tabledigestfsgluehmslifecyclepkgconfigprettyunitsprogressR6rappdirsrlangstringivctrswithr